Publicaties

Hier vindt u onze publicaties van het afgelopen jaar.


Altered Patterns of Compositional and Functional Disruption of the Gut Microbiota in Typhoid Fever and Nontyphoidal Febrile Illness.
Haak BW, de Jong HK, Kostidis S , Giera M , Maude RR, Samad R, Wijedoru L, Ghose A, Faiz MA, Parry CM, Wiersinga WJ
Open forum infectious diseases 2020 Jul;7(7):ofaa251
PMID:32715018 (2020 Jul 28) 

Biliary Microbiota and Bile Acid Composition in Cholelithiasis.
Petrov VA, Fernández-Peralbo MA, Derks R , Knyazeva EM, Merzlikin NV, Sazonov AE, Mayboroda OA , Saltykova IV
BioMed research international 2020;2020:1242364
PMID:32714973 (2020 Jul 28) 

Author Correction: Human DC-SIGN and CD23 do not interact with human IgG.
Temming AR, Dekkers G, van de Bovenkamp FS, Plomp HR , Bentlage AEH, Szittner Z, Derksen NIL, Wuhrer M , Rispens T, Vidarsson G
Scientific reports 2020 Jul 23;10(1):12560
PMID:32703963 (2020 Jul 25) 

IgG Fc N-glycosylation translates MHCII haplotype into autoimmune skin disease.
Clauder AK, Kordowski A, Bartsch YC, Köhl G, Lilienthal GM, Almeida LN, Lindemann T, Petry J, Rau CN, Gramalla-Schmitz A, Dühring L, Elbracht C, Kenno S, Tillmann J, Wuhrer M , Ludwig RJ, Ibrahim SM, Bieber K, Köhl J, Ehlers M, Manz RA
The Journal of investigative dermatology 2020 Jul 09;:
PMID:32653301 (2020 Jul 13) 

Mild Exercise Does Not Prevent Atherosclerosis in APOE*3-Leiden.CETP Mice or Improve Lipoprotein Profile of Men with Obesity.
In Het Panhuis W, Kooijman S, Brouwers B, Verhoeven A , Pronk ACM, Streefland TCM, Giera M , Schrauwen P, Rensen PCN, Schönke M
Obesity (Silver Spring, Md.) 2020 Jul;28 Suppl 1:S93-S103
PMID:32645256 (2020 Jul 10) 

Systematic Optimization of the iMALDI Workflow for the Robust and Straightforward Quantification of Signalling Proteins in Cancer Cells.
Froehlich BC, Popp R, Sobsey CA, Ibrahim S, LeBlanc AM, Mohammed Y , Aguilar-Mahecha A, Poetz O, Chen MX, Spatz A, Basik M, Batist G, Zahedi RP, Borchers CH
Proteomics. Clinical applications 2020 Jul 08;:e2000034
PMID:32643306 (2020 Jul 10) 

Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference.
Benedetti E, Gerstner N, Pučić-Baković M, Keser T, Reiding KR , Ruhaak LR , Štambuk T, Selman MHJ , Rudan I, Polasek O, Hayward C, Beekman M, Slagboom E, Wuhrer M , Dunlop MG, Lauc G, Krumsiek J
Metabolites 2020 Jul 02;10(7):
PMID:32630764 (2020 Jul 8) 

Metformin and statin use associate with plasma protein -glycosylation in people with type 2 diabetes.
Singh SS, Naber A, Dotz V , Schoep E, Memarian E , Slieker RC, Elders PJM, Vreeker G , Nicolardi S , Wuhrer M , Sijbrands EJG, Lieverse AG, 't Hart LM, van Hoek M
BMJ open diabetes research & care 2020 Jul;8(1):
PMID:32616483 (2020 Jul 4) 

Schistosoma haematobium infection is associated with lower serum cholesterol levels and improved lipid profile in overweight/obese individuals.
Zinsou JF, Janse JJ, Honpkehedji YY, Dejon-Agobé JC, García-Tardón N, Hoekstra PT, Massinga-Loembe M, Corstjens PLAM, van Dam GJ, Giera M , Kremsner PG, Yazdanbakhsh M, Adegnika AA, Guigas B
PLoS neglected tropical diseases 2020 Jul;14(7):e0008464
PMID:32614822 (2020 Jul 3)

Differential - and Glycosphingolipid Glycosylation in Human Pancreatic Adenocarcinoma Cells With Opposite Morphology and Metastatic Behavior.
Zhang T , van Die I, Tefsen B, van Vliet SJ, Laan LC, Zhang J, Ten Dijke P, Wuhrer M , Belo AI
Frontiers in oncology 2020;10:732
PMID:32582529 (2020 Jun 26) 

Role of glycosylation in TGF-β signaling and epithelial-to-mesenchymal transition in cancer.
Zhang J, Ten Dijke P, Wuhrer M , Zhang T
Protein & cell 2020 Jun 25;:
PMID:32583064 (2020 Jun 26) 

Cysteine Aminoethylation Enables the Site-Specific Glycosylation Analysis of Recombinant Human Erythropoietin using Trypsin.
Lippold S , Büttner A, Choo MSF, Hook M, de Jong CJ, Nguyen-Khuong T, Haberger M, Reusch D, Wuhrer M , de Haan N
Analytical chemistry 2020 Jul 21;92(14):9476-9481
PMID:32578997 (2020 Jun 25) 

Monoclonal immunoglobulins promote bone loss in multiple myeloma.
Westhrin M, Kovcic V, Zhang Z , Moen SH, Nedal TMV, Bondt A , Holst S , Misund K, Buene G, Sundan A, Waage A, Slørdahl T, Wuhrer M , Standal T
Blood 2020 Jun 23;:
PMID:32575115 (2020 Jun 24) 

Seizure protein 6 controls glycosylation and trafficking of kainate receptor subunits GluK2 and GluK3.
Pigoni M, Hsia HE, Hartmann J, Rudan Njavro J, Shmueli MD, Müller SA, Güner G, Tüshaus J, Kuhn PH, Kumar R, Gao P, Tran ML, Ramazanov B, Blank B, Hipgrave Ederveen AL , Von Blume J, Mulle C, Gunnersen JM, Wuhrer M , Rammes G, Busche MA, Koeglsperger T, Lichtenthaler SF
The EMBO journal 2020 Jun 22;:e103457
PMID:32567721 (2020 Jun 23) 

Expression of a squalene-tetrahymanol cyclase enables sterol-independent growth of .
Wiersma SJ, Mooiman C, Giera M , Pronk JT
Applied and environmental microbiology 2020 Jun 19;:
PMID:32561581 (2020 Jun 21)

Disturbed brain ether lipid metabolism and histology in Sjögren-Larsson syndrome.
Staps P, Rizzo WB, Vaz FM, Bugiani M, Giera M , Heijs B , van Kampen AHC, Pras-Raves ML, Breur M, Groen A, Ferdinandusse S, van der Graaf M, Van Goethem G, Lammens M, Wevers RA, Willemsen MAAP
Journal of inherited metabolic disease 2020 Jun 18;:
PMID:32557630 (2020 Jun 20) 

Metabolic reprogramming related to whole-chromosome instability in models for Hürthle cell carcinoma.
Addie RD, Kostidis S , Corver WE, Oosting J, Aminzadeh-Gohari S, Feichtinger RG, Kofler B, Aydemirli MD, Giera M , Morreau H
Scientific reports 2020 Jun 12;10(1):9578
PMID:32533088 (2020 Jun 14) 

Human-iPSC-Derived Cardiac Stromal Cells Enhance Maturation in 3D Cardiac Microtissues and Reveal Non-cardiomyocyte Contributions to Heart Disease.
Giacomelli E, Meraviglia V, Campostrini G, Cochrane A, Cao X, van Helden RWJ, Krotenberg Garcia A, Mircea M, Kostidis S, Davis RP, van Meer BJ, Jost CR, Koster AJ, Mei H, Míguez DG, Mulder AA, Ledesma-Terrón M, Pompilio G, Sala L, Salvatori DCF, Slieker RC, Sommariva E, de Vries AAF, Giera M, Semrau S, Tertoolen LGJ, Orlova VV, Bellin M, Mummery CL
Cell stem cell 2020 May 20;:
PMID:32459996 (2020 May 28)

MALDI-2 on a Trapped Ion Mobility Quadrupole Time-of-Flight Instrument for Rapid Mass Spectrometry Imaging and Ion Mobility Separation of Complex Lipid Profiles.
Soltwisch J, Heijs B, Koch A, Vens-Cappell S, Höhndorf J, Dreisewerd K
Analytical chemistry 2020 May 24;:
PMID:32449347 (2020 May 26)

Toll-like receptor signaling induces a temporal switch towards a resolving lipid profile in monocyte-derived macrophages.
von Hegedus JH, Kahnt AS, Ebert R, Heijink M, Toes REM, Giera M, Ioan-Facsinay A
Biochimica et biophysica acta. Molecular and cell biology of lipids 2020 May 21;:158740
PMID:32447052 (2020 May 25)

Toll-like receptor signaling induces a temporal switch towards a resolving lipid profile in monocyte-derived macrophages.
von Hegedus JH, Kahnt AS, Ebert R, Heijink M , Toes REM, Giera M , Ioan-Facsinay A
Biochimica et biophysica acta. Molecular and cell biology of lipids 2020 May 21;:158740
PMID:32447052 (2020 May 25) 

IgG Fc sialylation is regulated during the germinal center reaction upon immunization with different adjuvants.
Bartsch YC, Eschweiler S, Leliavski A, Lunding HB, Wagt S, Petry J, Lilienthal GM, Rahmöller J, de Haan N, Hölscher A, Erapaneedi R, Giannou AD, Aly L, Sato R, de Neef LA, Winkler A, Braumann D, Hobusch J, Kuhnigk K, Krémer V, Steinhaus M, Blanchard V, Gemoll T, Habermann JK, Collin M, Salinas G, Manz RA, Fukuyama H, Korn T, Waisman A, Yogev N, Huber S, Rabe B, Rose-John S, Busch H, Berberich-Siebelt F, Hölscher C, Wuhrer M, Ehlers M
The Journal of allergy and clinical immunology 2020 May 20;:
PMID:32445838 (2020 May 24)

Urinary metabolites associate with the rate of kidney function decline in patients with autosomal dominant polycystic kidney disease.
Dekker SEI, Verhoeven A, Soonawala D, Peters DJM, de Fijter JW, Mayboroda OA
PloS one 2020;15(5):e0233213
PMID:32442208 (2020 May 23)

FcγR Binding and ADCC Activity of Human IgG Allotypes.
de Taeye SW, Bentlage AEH, Mebius MM, Meesters JI, Lissenberg-Thunnissen S, Falck D, Sénard T, Salehi N, Wuhrer M, Schuurman J, Labrijn AF, Rispens T, Vidarsson G
Frontiers in immunology 2020;11:740
PMID:32435243 (2020 May 22)

Scientific workflow managers in metabolomics: an overview.
Verhoeven A, Giera M, Mayboroda OA
The Analyst 2020 May 06;:
PMID:32374793 (2020 May 7)

Immunopeptidome Analysis of HLA-DPB1 Allelic Variants Reveals New Functional Hierarchies.
van Balen P, Kester MGD, de Klerk W, Crivello P, Arrieta-Bolaños E, de Ru AH, Jedema I, Mohammed Y, Heemskerk MHM, Fleischhauer K, van Veelen PA, Falkenburg JHF
Journal of immunology (Baltimore, Md. : 1950) 2020 Apr 29;:
PMID:32350084 (2020 May 1)

Molecular signatures of tumor progression in myxoid liposarcoma identified by N-glycan mass spectrometry imaging.
Heijs B, Holst-Bernal S, de Graaff MA, Briaire-de Bruijn IH, Rodriguez-Girondo M, van de Sande MAJ, Wuhrer M, McDonnell LA, Bovée JVMG
Laboratory investigation; a journal of technical methods and pathology 2020 Apr 27;:
PMID:32341520 (2020 Apr 29)

Analyzing the impact of Mycobacterium tuberculosis infection on primary human macrophages by combined exploratory and targeted metabolomics.
Vrieling F, Kostidis S, Spaink HP, Haks MC, Mayboroda OA, Ottenhoff THM, Joosten SA
Scientific reports 2020 Apr 27;10(1):7085
PMID:32341411 (2020 Apr 29)

Development of a 96-well plate sample preparation method for integrated N- and O-glycomics using porous graphitized carbon liquid chromatography-mass spectrometry.
Zhang T, Madunic K, Holst S, Zhang J, Jin C, Ten Dijke P, Karlsson NG, Stavenhagen K, Wuhrer M
Molecular omics 2020 Apr 13;:
PMID:32281997 (2020 Apr 14)

Determination of the concentration range for 267 proteins from 21 lots of commercial human plasma using highly multiplexed multiple reaction monitoring mass spectrometry.
Gaither C, Popp R, Mohammed Y, Borchers CH
The Analyst 2020 Apr 07;:
PMID:32255452 (2020 Apr 8)

Colorectal cancer cell lines show striking diversity of their O-glycome reflecting the cellular differentiation phenotype.
Madunic K, Zhang T, Mayboroda OA, Holst S, Stavenhagen K, Jin C, Karlsson NG, Lageveen-Kammeijer GSM, Wuhrer M
Cellular and molecular life sciences : CMLS 2020 Mar 31;:
PMID:32236654 (2020 Apr 3)

Evaluation of Sibling and Twin Fragment Ions Improves the Structural Characterization of Proteins by Top-Down MALDI In-Source Decay Mass Spectrometry.
Nicolardi S, Kilgour DPA, Dolezal N, Drijfhout JW, Wuhrer M, van der Burgt YEM
Analytical chemistry 2020 Apr 02;:
PMID:32212639 (2020 Mar 28)

A Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry Assay for the Relative Quantitation of Antennary Fucosylated -Glycans in Human Plasma.
Rebello OD, Nicolardi S, Lageveen-Kammeijer GSM, Nouta J, Gardner RA, Mesker WE, Tollenaar RAEM, Spencer DIR, Wuhrer M, Falck D
Frontiers in chemistry 2020;8:138
PMID:32185163 (2020 Mar 19)

MHC Class I Stability is Modulated by Cell Surface Sialylation in Human Dendritic Cells.
Silva Z, Ferro T, Almeida D, Soares H, Ferreira JA, Deschepper FM, Hensbergen PJ, Pirro M, van Vliet SJ, Springer S, Videira PA
Pharmaceutics 2020 Mar 10;12(3):
PMID:32164343 (2020 Mar 14)

Lowering the increased intracellular pH of human-induced pluripotent stem cell-derived endothelial cells induces formation of mature Weibel-Palade bodies.
Tiemeier GL, de Koning R, Wang G, Kostidis S, Rietjens RGJ, Sol WMPJ, Dumas SJ, Giera M, van den Berg CW, Eikenboom JCJ, van den Berg BM, Carmeliet P, Rabelink TJ
Stem cells translational medicine 2020 Mar 12;:
PMID:32163224 (2020 Mar 13)

HILIC-MRM-MS for Linkage-Specific Separation of Sialylated Glycopeptides to Quantify Prostate-Specific Antigen Proteoforms.
van der Burgt YEM, Siliakus KM, Cobbaert CM, Ruhaak LR
Journal of proteome research 2020 Mar 18;:
PMID:32142289 (2020 Mar 7)

Plasma Protein Signatures of a Murine Venous Thrombosis Model and Slc44a2 Knockout Mice Using Quantitative-Targeted Proteomics.
Tilburg J, Michaud SA, Maracle CX, Versteeg HH, Borchers CH, van Vlijmen BJM, Mohammed Y
Thrombosis and haemostasis 2020 Mar;120(3):423-436
PMID:32135565 (2020 Mar 7)

Therapeutic iloprost for the treatment of acute respiratory distress syndrome (ARDS) (the ThIlo trial): a prospective, randomized, multicenter phase II study.
Haeberle H, Prohaska S, Martus P, Straub A, Zarbock A, Marx G, Zago M, Giera M, Koeppen M, Rosenberger P
Trials 2020 Mar 04;21(1):242
PMID:32131881 (2020 Mar 7)

Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.
Klaric L, Tsepilov YA, Stanton CM, Mangino M, Sikka TT, Esko T, Pakhomov E, Salo P, Deelen J, McGurnaghan SJ, Keser T, Vučković F, Ugrina I, Krištić J, Gudelj I, Štambuk J, Plomp R, Pučić-Baković M, Pavić T, Vilaj M, Trbojević-Akmačić I, Drake C, Dobrinić P, Mlinarec J, Jelušić B, Richmond A, Timofeeva M, Grishchenko AK, Dmitrieva J, Bermingham ML, Sharapov SZ, Farrington SM, Theodoratou E, Uh HW, Beekman M, Slagboom EP, Louis E, Georges M, Wuhrer M, Colhoun HM, Dunlop MG, Perola M, Fischer K, Polasek O, Campbell H, Rudan I, Wilson JF, Zoldoš V, Vitart V, Spector T, Aulchenko YS, Lauc G, Hayward C
Science advances 2020 02;6(8):eaax0301
PMID:32128391 (2020 Mar 5) 

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